Welcome to HOLLy’s documentation!

HOLLy is a PyTorch based program that attempts to recreate 3D structure from a series of 2D Single Molecule Localisation Microscopy images.

Note

This project is under active development.

Contents

• Install
  • CUDA and GPU acceleration
  • via a virtual environment install
  • via the included docker
• Usage
  • Using a virtual environment
  • Using Docker
  • Working with images
  • Further options
  • Testing a trained net